Identifying key interactions isn’t always straightforward. Static models can miss critical dynamics that influence binding and stability. MD simulations allow us to observe targets in motion, uncover hidden interactions, and improve molecular design strategies.

Our team brings years of experience applying MD across diverse target classes and modalities, supported by cutting-edge technologies and secure cloud computing. From short trajectories to complex membrane systems, we combine technical excellence with computational power.
By using advanced protocols such as SygProbe, our proprietary mixed-solvent MD approach, we map binding sites to identify regions that favor lipophilic or polar interactions. These insights drive smarter compound optimization.

Our Approach

Orion platform for scalable cloud-based simulations:

  • Short-Trajectory Molecular Dynamics (STMD) for rapid binding assessments
  • Cryptic Pocket Detection to reveal hidden opportunities
  • Non-equilibrium switching (NES) for advanced free energy calculations

Sygnature Compute Cluster:

  • Proprietary membrane MD with bespoke lipid composition
  • Proprietary mixed Solvent MD (SygProbe) for probing binding site polarity
  • Industry-standard engines: GROMACS, OpenMM/OpenFF

Why Choose Sygnature Discovery

We don’t just run simulations; we integrate MD insights into real-world synthesis decisions. Our team of experts unite years of experience across multiple target classes and modalities, with access to the newest technologies and secure cloud computing.

Our proprietary high performance compute cluster, which powers in house tools such as Mixed Solvent MD and Membrane MD enable faster, more accurate predictions of ligand stability and binding quality. Whether detecting cryptic pockets, or modeling GPCRs in membranes, we help you make confident design choices that accelerate discovery.

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Related Capabilities

Protein Structure Prediction
Protein Ternary Prediction
Molecular Dynamic Simulations
Generative AI and Machine Learning
Virtual Screening
Target Analysis
Ligand Based Drug Discovery
Structure-Based Drug Design

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